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    ATG13 Autophagy-related protein 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824121, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATG13
    Official Full Name
    Autophagy-related protein 13
    Primary source
    TAIR:AT3G49590
    Locus tag
    AT3G49590
    See related
    Araport:AT3G49590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    autophagy-related 13
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    Genomic context

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    See ATG13 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (18377409..18380369)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene response to low sulfur 3 Neighboring gene response to low sulfur 1 Neighboring gene ubiquitin-specific protease 26 Neighboring gene pre-mRNA-splicing factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis SINAT Proteins Control Autophagy by Mediating Ubiquitylation and Degradation of ATG13. Qi H, et al. Plant Cell, 2020 Jan. PMID 31732704, Free PMC Article
    2. The ATG1/ATG13 protein kinase complex is both a regulator and a target of autophagic recycling in Arabidopsis. Suttangkakul A, et al. Plant Cell, 2011 Oct. PMID 21984698, Free PMC Article
    3. 14-3-3 proteins contribute to autophagy by modulating SINAT-mediated degradation of ATG13. Qi H, et al. Plant Cell, 2022 Nov 29. PMID 36053201, Free PMC Article
    4. AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis. Li F, et al. Plant Cell, 2014 Feb. PMID 24563201, Free PMC Article
    5. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis SINAT Proteins Control Autophagy by Mediating Ubiquitylation and Degradation of ATG13.
      Title: Arabidopsis SINAT Proteins Control Autophagy by Mediating Ubiquitylation and Degradation of ATG13.
    2. The ATG1/13 complex in Arabidopsis thaliana is both a regulator and a target of autophagy.
      Title: The ATG1/ATG13 protein kinase complex is both a regulator and a target of autophagic recycling in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203114.1
    NM_114819.3
    NM_180342.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in autophagy IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Atg1/ULK1 kinase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in autophagosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Autophagy-related protein 13
    NP_001190043.1
    • Autophagy-related protein 13; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G18770.1).
    NP_190528.1
    • Autophagy-related protein 13; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G18770.1); Has 1957 Blast hits to 674 proteins in 207 species: Archae - 0; Bacteria - 87; Metazoa - 293; Fungi - 173; Plants - 114; Viruses - 5; Other Eukaryotes - 1285 (source: NCBI BLink).
    NP_850673.1
    • Autophagy-related protein 13; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G18770.1); Has 1960 Blast hits to 677 proteins in 208 species: Archae - 0; Bacteria - 87; Metazoa - 293; Fungi - 176; Plants - 114; Viruses - 5; Other Eukaryotes - 1285 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18377409..18380369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114819.3 → NP_190528.1  Autophagy-related protein 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190528.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SCK0
      UniProtKB/TrEMBL
      A0A178V757
      Conserved Domains (1) summary
      pfam10033
      Location:18 → 229
      ATG13; Autophagy-related protein 13

    2. NM_001203114.1 → NP_001190043.1  Autophagy-related protein 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190043.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V757, F4IXZ6
      Conserved Domains (1) summary
      pfam10033
      Location:18 → 229
      ATG13; Autophagy-related protein 13

    3. NM_180342.1 → NP_850673.1  Autophagy-related protein 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850673.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SCK0
      UniProtKB/TrEMBL
      A0A178V757
      Conserved Domains (1) summary
      pfam10033
      Location:18 → 229
      ATG13; Autophagy-related protein 13
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCK0.1

    Gene LinkOut

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