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    pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824292, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632)
    Primary source
    TAIR:AT3G51290
    Locus tag
    AT3G51290
    See related
    Araport:AT3G51290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Altered Phosphate Starvation Response 1; APSR1
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (19039512..19044371)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene protein serine/threonine kinase Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene RHO-related protein from plants 1 Neighboring gene VPS35 homolog C Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. APSR1, a novel gene required for meristem maintenance, is negatively regulated by low phosphate availability. González-Mendoza V, et al. Plant Sci, 2013 May. PMID 23498857
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_114988.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within meristem maintenance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632)
    NP_001190052.1
    • FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT1G02110.1).
    NP_190697.2
    • Protein of unknown function (DUF630); Protein of unknown function (DUF632); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT1G02110.1); Has 36219 Blast hits to 19553 proteins in 1081 species: Archae - 111; Bacteria - 4892; Metazoa - 13250; Fungi - 3535; Plants - 7790; Viruses - 1372; Other Eukaryotes - 5269 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19039512..19044371
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203123.1 → NP_001190052.1  pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190052.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XJS9, A0A654FET7, F4J3B2
      Conserved Domains (4) summary
      cd04133
      Location:635 → 779
      Rop_like; Rho-related protein from plants (Rop)-like
      smart00173
      Location:608 → 778
      RAS; Ras subfamily of RAS small GTPases
      pfam04782
      Location:203 → 509
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 59
      DUF630; Protein of unknown function (DUF630)

    2. NM_001339498.1 → NP_001327368.1  pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VBJ0, A0A1I9LS38, Q9SD19
      UniProtKB/TrEMBL
      A0A384KMY1
      Conserved Domains (2) summary
      pfam04782
      Location:202 → 507
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 59
      DUF630; Protein of unknown function (DUF630)

    3. NM_114988.3 → NP_190697.2  pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190697.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J3B3
      Conserved Domains (2) summary
      pfam04782
      Location:203 → 503
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 59
      DUF630; Protein of unknown function (DUF630)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A178VBJ0.1

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