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    ATG18D autophagy 18 D-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824811, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATG18D
    Official Full Name
    autophagy 18 D-like protein
    Primary source
    TAIR:AT3G56440
    Locus tag
    AT3G56440
    See related
    Araport:AT3G56440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATATG18D; homolog of yeast autophagy 18 (ATG18) D
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    Genomic context

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    See ATG18D in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (20926001..20928993)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Thioredoxin superfamily protein Neighboring gene import inner membrane translocase subunit Neighboring gene alpha-soluble NSF attachment protein 1 Neighboring gene ncRNA Neighboring gene GroES-like zinc-binding alcohol dehydrogenase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339797.1
    NM_115502.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    autophagy 18 D-like protein
    NP_191203.2
    • homolog of yeast autophagy 18 (ATG18) D (ATG18D); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18C (TAIR:AT2G40810.2); Has 1451 Blast hits to 1383 proteins in 243 species: Archae - 0; Bacteria - 34; Metazoa - 579; Fungi - 434; Plants - 212; Viruses - 2; Other Eukaryotes - 190 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20926001..20928993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339796.1 → NP_001326816.1  autophagy 18 D-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQF3, A0A5S9XN25
      Conserved Domains (2) summary
      sd00039
      Location:38 → 74
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:91 → 278
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. NM_115502.4 → NP_191203.2  autophagy 18 D-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191203.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPK3, Q9LXZ6
      UniProtKB/TrEMBL
      A0A654FGB8
      Conserved Domains (2) summary
      sd00039
      Location:38 → 74
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:91 → 278
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. NM_001339797.1 → NP_001326815.1  autophagy 18 D-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQF2, A0A5S9XN25
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WPK3.1

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