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    hypothetical protein (DUF581) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831017, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF581)
    Primary source
    TAIR:AT5G11460
    Locus tag
    AT5G11460
    See related
    Araport:AT5G11460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15N18.50; F15N18_50
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (3656582..3659025, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SPOC domain / Transcription elongation factor S-II protein Neighboring gene uncharacterized protein Neighboring gene CTC-interacting domain 5 Neighboring gene PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) Neighboring gene bromo-adjacent homology (BAH) domain-containing protein Neighboring gene tRNA-Phe

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The FCS-LIKE ZINC FINGER 6 and 10 are involved in regulating osmotic stress responses in Arabidopsis. Jamsheer K M, et al. Plant Signal Behav, 2019. PMID 30871406, Free PMC Article
    2. FCS-like zinc finger 6 and 10 repress SnRK1 signalling in Arabidopsis. Jamsheer K M, et al. Plant J, 2018 Apr. PMID 29406622
    3. Expression of Arabidopsis FCS-Like Zinc finger genes is differentially regulated by sugars, cellular energy level, and abiotic stress. Jamsheer K M, et al. Front Plant Sci, 2015. PMID 26442059, Free PMC Article
    4. The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Nietzsche M, et al. Front Plant Sci, 2014. PMID 24600465, Free PMC Article
    5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_121184.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to salt IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within seedling development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hypothetical protein (DUF581)
    NP_196707.1
    • Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT2G25690.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3656582..3659025 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121184.3 → NP_196707.1  hypothetical protein (DUF581) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196707.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LYE4
      UniProtKB/TrEMBL
      A0A178UQ49
      Conserved Domains (1) summary
      pfam04570
      Location:267 → 307
      zf-FLZ; zinc-finger of the FCS-type, C2-C2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYE4.1

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