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    VASCULAR-RELATED NAC-DOMAIN 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835314, updated on 18-Sep-2024

    Summary

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    Official Full Name
    VASCULAR-RELATED NAC-DOMAIN 6
    Primary source
    TAIR:AT5G52380
    Locus tag
    AT5G52380
    See related
    Araport:AT5G52380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K24M7.12; K24M7_12; VASCULAR-RELATED NAC-DOMAIN 6; VND6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (21261353..21263151, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene actin depolymerizing factor 10 Neighboring gene 28S ribosomal S34 protein Neighboring gene PAR1 protein Neighboring gene cytochrome P450, family 715, subfamily A, polypeptide 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots. Yamaguchi M, et al. Plant J, 2008 Aug. PMID 18445131
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124617.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    VASCULAR-RELATED NAC-DOMAIN 6
    NP_200051.1
    • VASCULAR-RELATED NAC-DOMAIN 6; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G43590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21261353..21263151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124617.3 → NP_200051.1  VASCULAR-RELATED NAC-DOMAIN 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200051.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UL73, Q8GWY7, Q9FHC2
      Conserved Domains (1) summary
      PTZ00368
      Location:66 → 197
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    Nucleotide Protein
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