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    histone deacetylase-related / HD-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836226, updated on 18-Sep-2024

    Summary

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    Official Full Name
    histone deacetylase-related / HD-like protein
    Primary source
    TAIR:AT5G61050
    Locus tag
    AT5G61050
    See related
    Araport:AT5G61050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAF19.6; MAF19_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (24565482..24566615, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene exocyst subunit exo70 family protein E2 Neighboring gene evolutionarily conserved C-terminal region 3 Neighboring gene glycine-rich RNA-binding protein 3 Neighboring gene uncharacterized protein Neighboring gene histone deacetylase 5 Neighboring gene histone deacetylase of the RPD3/HDA1 superfamily 18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    histone deacetylase-related / HD-like protein
    NP_200913.1
    • histone deacetylase-related / HD-related; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24565482..24566615 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125498.1 → NP_200913.1  histone deacetylase-related / HD-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200913.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQ33, A0A5S9YG01, Q9FNQ9
    Nucleotide Protein
    Heading Accession and Version

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