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    YAB5 plant-specific transcription factor YABBY family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817199, updated on 18-Sep-2024

    Summary

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    Official Symbol
    YAB5
    Official Full Name
    plant-specific transcription factor YABBY family protein
    Primary source
    TAIR:AT2G26580
    Locus tag
    AT2G26580
    See related
    Araport:AT2G26580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9J22.25; T9J22_25; YABBY5
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    Genomic context

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    See YAB5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (11303455..11307010, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phospholipase A 2A Neighboring gene WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) Neighboring gene regulatory particle non-ATPase 13 Neighboring gene Glycosyl hydrolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Organ polarity in Arabidopsis. NOZZLE physically interacts with members of the YABBY family. Sieber P, et al. Plant Physiol, 2004 Aug. PMID 15299139, Free PMC Article
    2. YABBYs and the transcriptional corepressors LEUNIG and LEUNIG_HOMOLOG maintain leaf polarity and meristem activity in Arabidopsis. Stahle MI, et al. Plant Cell, 2009 Oct. PMID 19837869, Free PMC Article
    3. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YAB5 interact with LUG and LUH. Together these proteins maintain leaf polarity and meristem activity in Arabidopsis.
      Title: YABBYs and the transcriptional corepressors LEUNIG and LEUNIG_HOMOLOG maintain leaf polarity and meristem activity in Arabidopsis.
    2. Nozzle protein bound filamentous flower and yabby3. (nozzle protein) in Arabidopsis.
      Title: Organ polarity in Arabidopsis. NOZZLE physically interacts with members of the YABBY family.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_179749.3
    NM_179750.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in polarity specification of adaxial/abaxial axis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of shoot apical meristem development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plant-specific transcription factor YABBY family protein
    NP_850080.1
    • YABBY5 (YAB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 458 Blast hits to 449 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    NP_850081.1
    • YABBY5 (YAB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 458 Blast hits to 449 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11303455..11307010 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179749.3 → NP_850080.1  plant-specific transcription factor YABBY family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850080.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48725, Q8GW46
      UniProtKB/TrEMBL
      A0A178VPK4, A0A5S9X1L8
      Conserved Domains (1) summary
      pfam04690
      Location:7 → 153
      YABBY; YABBY protein

    2. NM_179750.3 → NP_850081.1  plant-specific transcription factor YABBY family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850081.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48725, Q8GW46
      UniProtKB/TrEMBL
      A0A178VPK4, A0A5S9X1L8
      Conserved Domains (1) summary
      pfam04690
      Location:7 → 153
      YABBY; YABBY protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GW46.1

    Gene LinkOut

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