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    mxtx2 mix-type homeobox gene 2 [ Danio rerio (zebrafish) ]

    Gene ID: 58078, updated on 9-Dec-2024

    Summary

    Official Symbol
    mxtx2provided by ZNC
    Official Full Name
    mix-type homeobox gene 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-000710-6
    See related
    Ensembl:ENSDARG00000015906 AllianceGenome:ZFIN:ZDB-GENE-000710-6
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    mtx2; zgc:136526
    Summary
    Enables sequence-specific DNA binding activity. Acts upstream of or within actin filament organization and gastrulation. Predicted to be active in nucleus. Is expressed in blastodisc; margin; presumptive mesoderm; and yolk syncytial layer. Orthologous to several human genes including DUX1 (double homeobox 1); DUX3 (double homeobox 3); and DUX4 (double homeobox 4). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See mxtx2 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (29236279..29237815)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (29121377..29122913)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor A1a Neighboring gene si:ch211-214e3.5 Neighboring gene BMS1 ribosome biogenesis factor Neighboring gene SH2 domain containing 4Bb

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    General gene information

    Clone Names

    • MGC136526

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079816.1NP_001073284.1  mix-type homeobox gene 2

      See identical proteins and their annotated locations for NP_001073284.1

      Status: PROVISIONAL

      Source sequence(s)
      BC115163
      UniProtKB/TrEMBL
      B3DFZ4, Q1RM27
      Related
      ENSDARP00000025485.8, ENSDART00000006505.9
      Conserved Domains (1) summary
      smart00389
      Location:2276
      HOX; Homeodomain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      29236279..29237815
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394849.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      312145..313681
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)