rab3gap1 RAB3 GTPase activating protein subunit 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rab3gap1provided by ZNC
Official Full Name: RAB3 GTPase activating protein subunit 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-061027-53
See related: Ensembl:ENSDARG00000098079 AllianceGenome:ZFIN:ZDB-GENE-061027-53
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj56a04; rab3gap; wu:fj56a04; zgc:152826
Summary: Predicted to enable GTPase activator activity. Predicted to be involved in brain development and positive regulation of autophagosome assembly. Predicted to act upstream of or within positive regulation of GTPase activity. Predicted to be located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in Warburg micro syndrome 1. Orthologous to human RAB3GAP1 (RAB3 GTPase activating protein catalytic subunit 1). [provided by Alliance of Genome Resources, Jan 2025]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (56336516..56399714, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (56713201..56792268, complement)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fj56a04.x1 (e-PCR)
- UniSTS:188691

z3077A (e-PCR)
- UniSTS:205175

Z7001 (e-PCR)
- UniSTS:78199

G46877 (e-PCR)
- UniSTS:107673

fd18g01.x1 (e-PCR)
- UniSTS:204229

Z9975 (e-PCR)
- UniSTS:49385

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables GTPase activator activity	IBA Inferred from Biological aspect of Ancestor more info
enables GTPase activator activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in brain development	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within positive regulation of GTPase activity	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of autophagosome assembly	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: rab3 GTPase-activating protein catalytic subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.