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    angptl5 angiopoietin-like 5 [ Danio rerio (zebrafish) ]

    Gene ID: 566212, updated on 9-Dec-2024

    Summary

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    Official Symbol
    angptl5provided by ZNC
    Official Full Name
    angiopoietin-like 5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5054
    See related
    Ensembl:ENSDARG00000056630 AllianceGenome:ZFIN:ZDB-GENE-030131-5054
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    bZ1P14.8; wu:fe36e01; si:rp71-1p14.8
    Summary
    Predicted to enable signaling receptor binding activity. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Orthologous to human ANGPTL5 (angiopoietin like 5). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See angptl5 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (22820852..22829442, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (22784247..22792021, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 42a Neighboring gene transient receptor potential cation channel, subfamily C, member 6a Neighboring gene cilia and flagella associated protein 300 Neighboring gene baculoviral IAP repeat containing 2 Neighboring gene polymerase (DNA directed), theta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in collagen-containing extracellular matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    angiopoietin-related protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      22820852..22829442 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068216048.1 → XP_068072149.1  angiopoietin-related protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A8M6YVC2, F1QUC4
      Related
      ENSDARP00000125731.1, ENSDART00000150993.3

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395091.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      245322..252198 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068218968.1 → XP_068075069.1  angiopoietin-related protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A8M6YX73, A0A8M9PWB1

    2. XM_068218969.1 → XP_068075070.1  angiopoietin-related protein 5 isoform X3

      UniProtKB/TrEMBL
      A0A8M6YX73, A0A8M9Q7A5
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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