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    efhd1 EF-hand domain family, member D1 [ Danio rerio (zebrafish) ]

    Gene ID: 335521, updated on 9-Dec-2024

    Summary

    Official Symbol
    efhd1provided by ZNC
    Official Full Name
    EF-hand domain family, member D1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7461
    See related
    Ensembl:ENSDARG00000043446 AllianceGenome:ZFIN:ZDB-GENE-030131-7461
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj19b07; wu:fj19b07; si:ch211-281l24.1
    Summary
    Predicted to enable calcium ion binding activity. Orthologous to human EFHD1 (EF-hand domain family member D1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See efhd1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (40188077..40212208)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (40341025..40365156)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 502-like Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene potassium inwardly rectifying channel subfamily J member 13 Neighboring gene galactose-3-O-sulfotransferase 2

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    EF-hand domain-containing protein D1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305594.1NP_001292523.1  EF-hand domain-containing protein D1

      Status: VALIDATED

      Source sequence(s)
      CN832603, CR388129, EH433935, EH457763
      UniProtKB/TrEMBL
      A0A8M1P1U5, F1R647
      Related
      ENSDARP00000063778.3, ENSDART00000063779.4
      Conserved Domains (2) summary
      cd00051
      Location:86140
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:83140
      EF-hand_7; EF-hand domain pair

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      40188077..40212208
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)