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    si:dkey-100n23.3 si:dkey-100n23.3 [ Danio rerio (zebrafish) ]

    Gene ID: 571373, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkey-100n23.3provided by ZNC
    Official Full Name
    si:dkey-100n23.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070912-345
    See related
    Ensembl:ENSDARG00000062148 AllianceGenome:ZFIN:ZDB-GENE-070912-345
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable SUMO-specific endopeptidase activity. Predicted to be involved in protein desumoylation. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm and nucleus. Orthologous to human SENP7 (SUMO specific peptidase 7). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-100n23.3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (30217819..30243374, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (30407078..30432796, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene toll-like receptor 20f Neighboring gene toll-like receptor 13 Neighboring gene si:dkey-100n23.4 Neighboring gene si:dkey-100n23.5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables SUMO-specific endopeptidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables cysteine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein desumoylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    sentrin-specific protease 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      30217819..30243374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223648.1 → XP_068079749.1  sentrin-specific protease 7 isoform X2

    2. XM_005167770.5 → XP_005167827.1  sentrin-specific protease 7 isoform X1

      See identical proteins and their annotated locations for XP_005167827.1

      UniProtKB/TrEMBL
      A0A8M9QBG7, F1Q9H5
      Related
      ENSDARP00000083972.5, ENSDART00000089539.7
      Conserved Domains (1) summary
      COG5160
      Location:678 → 939
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

    3. XM_005167771.5 → XP_005167828.1  sentrin-specific protease 7 isoform X1

      See identical proteins and their annotated locations for XP_005167828.1

      UniProtKB/TrEMBL
      A0A8M9QBG7, F1Q9H5
      Conserved Domains (1) summary
      COG5160
      Location:678 → 939
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

    4. XM_021478984.2 → XP_021334659.1  sentrin-specific protease 7 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QBG7, F1Q9H5
      Conserved Domains (1) summary
      COG5160
      Location:678 → 939
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein Strain
    Heading Accession and Version

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