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    ccdc71 coiled-coil domain containing 71 [ Danio rerio (zebrafish) ]

    Gene ID: 557283, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ccdc71provided by ZNC
    Official Full Name
    coiled-coil domain containing 71provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6208
    See related
    Ensembl:ENSDARG00000071570 AllianceGenome:ZFIN:ZDB-GENE-030131-6208
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi38h02; wu:fi38h02; wu:fi39b10; si:dkeyp-87e7.4
    Summary
    Orthologous to human CCDC71 (coiled-coil domain containing 71). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ccdc71 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (10232527..10262441)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (10202845..10232759)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase E1 subunit beta Neighboring gene potassium channel tetramerization domain containing 6a Neighboring gene uncharacterized LOC108181206 Neighboring gene stabilin 1 Neighboring gene nischarin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC557283
    Names
    LOC557283 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044710.1 → NP_001038175.1  uncharacterized protein LOC557283

      Status: PREDICTED

      Source sequence(s)
      BX649457
      UniProtKB/TrEMBL
      A0A8M1N972, Q1LVR7
      Related
      ENSDARP00000118626.1, ENSDART00000139297.2
      Conserved Domains (1) summary
      pfam15374
      Location:12 → 341
      CCDC71L; Coiled-coil domain-containing protein 71L

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      10232527..10262441
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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