U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    txlnba taxilin beta a [ Danio rerio (zebrafish) ]

    Gene ID: 563018, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    txlnbaprovided by ZNC
    Official Full Name
    taxilin beta aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-322
    See related
    Ensembl:ENSDARG00000020594 AllianceGenome:ZFIN:ZDB-GENE-030131-322
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb22f07; wu:fb22f07; si:dkey-34f16.1
    Summary
    Predicted to enable syntaxin binding activity. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Orthologous to human TXLNB (taxilin beta). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See txlnba in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (36848421..36887176, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (36942908..36984310, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene ABRA C-terminal like Neighboring gene hdc homolog, cell cycle regulator Neighboring gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 Neighboring gene neuromedin B receptor

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    beta-taxilin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      36848421..36887176 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005160808.5 → XP_005160865.1  beta-taxilin isoform X2

      UniProtKB/TrEMBL
      A0A8M2B7P2, Q5RIN3
      Related
      ENSDARP00000115010.2, ENSDART00000143515.4
      Conserved Domains (1) summary
      pfam09728
      Location:97 → 404
      Taxilin; Myosin-like coiled-coil protein

    2. XM_686382.8 → XP_691474.4  beta-taxilin isoform X1

      See identical proteins and their annotated locations for XP_691474.4

      UniProtKB/TrEMBL
      A0A8N7T794, F1Q5J1, Q5RIN4
      Related
      ENSDARP00000070788.5, ENSDART00000076313.5
      Conserved Domains (1) summary
      pfam09728
      Location:97 → 404
      Taxilin; Myosin-like coiled-coil protein

    3. XM_005160807.5 → XP_005160864.1  beta-taxilin isoform X1

      See identical proteins and their annotated locations for XP_005160864.1

      UniProtKB/TrEMBL
      A0A8N7T794, F1Q5J1, Q5RIN4
      Related
      ENSDARP00000121277.2, ENSDART00000146994.4
      Conserved Domains (1) summary
      pfam09728
      Location:97 → 404
      Taxilin; Myosin-like coiled-coil protein
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.