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    pfdn2 prefoldin subunit 2 [ Danio rerio (zebrafish) ]

    Gene ID: 323012, updated on 9-Dec-2024

    Summary

    Official Symbol
    pfdn2provided by ZNC
    Official Full Name
    prefoldin subunit 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060519-27
    See related
    Ensembl:ENSDARG00000025391 AllianceGenome:ZFIN:ZDB-GENE-060519-27
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:6895552; wu:fb79a01; zgc:136473
    Summary
    Predicted to enable protein folding chaperone. Predicted to be involved in protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN2 (prefoldin subunit 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See pfdn2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (7477398..7493741, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (7244029..7260372, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene beta-1,4-glucuronyltransferase 1 Neighboring gene nitrilase 1 Neighboring gene chloride channel 3 Neighboring gene uncharacterized LOC100536361 Neighboring gene uncharacterized LOC101882062

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables protein folding chaperone IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in protein folding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within protein folding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of prefoldin complex IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045289.1NP_001038754.1  prefoldin subunit 2

      See identical proteins and their annotated locations for NP_001038754.1

      Status: PROVISIONAL

      Source sequence(s)
      BC116551
      UniProtKB/TrEMBL
      A0A8M1NAE4, Q1JPY6
      Related
      ENSDARP00000035261.6, ENSDART00000036703.7
      Conserved Domains (1) summary
      pfam01920
      Location:23125
      Prefoldin_2; Prefoldin subunit

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      7477398..7493741 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394672.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      28170..44513 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)