slc27a1a solute carrier family 27 member 1a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc27a1aprovided by ZNC
Official Full Name: solute carrier family 27 member 1aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050320-112
See related: Ensembl:ENSDARG00000006240 AllianceGenome:ZFIN:ZDB-GENE-050320-112
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc10e12; slc27a1; wu:fc10e12; zgc:101649
Summary: Predicted to enable long-chain fatty acid transmembrane transporter activity and oleoyl-CoA ligase activity. Predicted to be involved in long-chain fatty acid import into cell; long-chain fatty acid metabolic process; and medium-chain fatty acid transport. Predicted to act upstream of or within lipid metabolic process. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Orthologous to human SLC27A1 (solute carrier family 27 member 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (52545014..52603683)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (52290351..52349020)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc10e12.x1 (e-PCR)
- UniSTS:192460

fc10e12.x1 (e-PCR)
- UniSTS:192461

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ligase activity	IEA Inferred from Electronic Annotation more info
enables long-chain fatty acid transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables long-chain fatty acid-CoA ligase activity	IEA Inferred from Electronic Annotation more info
enables oleoyl-CoA ligase activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within lipid metabolic process	IEA Inferred from Electronic Annotation more info
involved_in long-chain fatty acid import into cell	IBA Inferred from Biological aspect of Ancestor more info
involved_in long-chain fatty acid metabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in medium-chain fatty acid transport	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in endoplasmic reticulum membrane	IBA Inferred from Biological aspect of Ancestor more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: long-chain fatty acid transport protein 1a

Names: solute carrier family 27 (fatty acid transporter), member 1; solute carrier family 27 (fatty acid transporter), member 1a

NP_001013555.1

EC 6.2.1.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001013537.1 → NP_001013555.1 long-chain fatty acid transport protein 1a

See identical proteins and their annotated locations for NP_001013555.1

Status: PROVISIONAL

Source sequence(s)

BC090824

UniProtKB/TrEMBL

Q5BL26

Related

ENSDARP00000006540.6, ENSDART00000018908.7

Conserved Domains (2) summary

PRK08279
Location:75 → 647

PRK08279; long-chain-acyl-CoA synthetase; Validated

cl17068
Location:101 → 612

AFD_class_I; Adenylate forming domain, Class I superfamily