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    tmem30b transmembrane protein 30B [ Danio rerio (zebrafish) ]

    Gene ID: 431726, updated on 9-Dec-2024

    Summary

    Official Symbol
    tmem30bprovided by ZNC
    Official Full Name
    transmembrane protein 30Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040704-17
    See related
    Ensembl:ENSDARG00000054122 AllianceGenome:ZFIN:ZDB-GENE-040704-17
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:91908; wu:fj32a10
    Summary
    Predicted to be involved in phospholipid translocation. Predicted to be located in membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and plasma membrane. Orthologous to human TMEM30B (transmembrane protein 30B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See tmem30b in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (28102519..28110178)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (28085524..28093215)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488108 Neighboring gene lysine (K)-specific demethylase 1a Neighboring gene 5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled Neighboring gene MAM domain containing glycosylphosphatidylinositol anchor 2a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in phospholipid translocation  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus  
    is_active_in endoplasmic reticulum  
    located_in membrane  
    is_active_in plasma membrane  

    General protein information

    Preferred Names
    cell cycle control protein 50B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002179.1 → NP_001002179.1  cell cycle control protein 50B

      See identical proteins and their annotated locations for NP_001002179.1

      Status: PROVISIONAL

      Source sequence(s)
      BC074091
      UniProtKB/TrEMBL
      A0A8M2B568, Q6GMG4
      Related
      ENSDARP00000070742.3, ENSDART00000076265.4
      Conserved Domains (1) summary
      pfam03381
      Location:58 → 334
      CDC50; LEM3 (ligand-effect modulator 3) family / CDC50 family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      28102519..28110178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005158776.5 → XP_005158833.1  cell cycle control protein 50B isoform X1

      See identical proteins and their annotated locations for XP_005158833.1

      UniProtKB/TrEMBL
      A0A8M2B568, Q6GMG4
      Conserved Domains (1) summary
      pfam03381
      Location:58 → 334
      CDC50; LEM3 (ligand-effect modulator 3) family / CDC50 family
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