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    matr3l1.2 matrin 3-like 1.2 [ Danio rerio (zebrafish) ]

    Gene ID: 556290, updated on 9-Dec-2024

    Summary

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    Official Symbol
    matr3l1.2provided by ZNC
    Official Full Name
    matrin 3-like 1.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090505-1
    See related
    Ensembl:ENSDARG00000000394 AllianceGenome:ZFIN:ZDB-GENE-090505-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    MATR3; matr3l; wu:fb78d04; wu:fc09f04; wu:fe36a04; si:bz1d10.1; si:bz1d10.2
    Summary
    Is expressed in brain; gut; and retina. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 21. Orthologous to human MATR3 (matrin 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See matr3l1.2 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (25079782..25099990, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (24782537..24802747, complement)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene si:rp71-1d10.6 Neighboring gene matrin 3-like 1.1 Neighboring gene si:rp71-1d10.8 Neighboring gene 5-hydroxytryptamine receptor 4 Neighboring gene microRNA 458

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. ALS-associated genes display CNS expression in the developing zebrafish. Laboissonniere LA, et al. Gene Expr Patterns, 2018 Dec. PMID 30165106
    2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    matrin 3-like 1.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001122784.2 → NP_001116256.2  matrin 3-like 1.2

      Status: VALIDATED

      Source sequence(s)
      AL645792
      UniProtKB/TrEMBL
      A0A8M1NIA3, A0A8M2BKD7, Q800H6
      Related
      ENSDARP00000117572.2, ENSDART00000144168.3
      Conserved Domains (4) summary
      COG0724
      Location:853 → 992
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12436
      Location:442 → 515
      RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
      cd12714
      Location:763 → 839
      RRM1_MATR3; RNA recognition motif 1 in vertebrate matrin-3
      cd12715
      Location:863 → 942
      RRM2_MATR3; RNA recognition motif 2 in vertebrate matrin-3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      25079782..25099990 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068213213.1 → XP_068069314.1  matrin 3-like 1.2 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BKV4
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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