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    vta1 vesicle (multivesicular body) trafficking 1 [ Danio rerio (zebrafish) ]

    Gene ID: 406414, updated on 9-Dec-2024

    Summary

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    Official Symbol
    vta1provided by ZNC
    Official Full Name
    vesicle (multivesicular body) trafficking 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2154
    See related
    Ensembl:ENSDARG00000013732 AllianceGenome:ZFIN:ZDB-GENE-040426-2154
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    c6orf55; zgc:64104; wu:fb08c11
    Summary
    Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Predicted to act upstream of or within protein transport. Predicted to be located in endosome membrane. Predicted to be active in multivesicular body. Orthologous to human VTA1 (vesicle trafficking 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See vta1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (37300725..37376660)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (37397806..37473781)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene neuromedin B receptor Neighboring gene gap junction protein epsilon 1a Neighboring gene adhesion G protein-coupled receptor G6 Neighboring gene si:ch211-202p1.5 Neighboring gene transfer RNA phenylalanine (anticodon GAA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Zeng S, et al. Gene, 2002 Jul 10. PMID 12234666
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in late endosome to vacuole transport via multivesicular body sorting pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within late endosome to vacuole transport via multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in multivesicular body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein VTA1 homolog
    Names
    Vps20-associated 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213140.1 → NP_998305.1  vacuolar protein sorting-associated protein VTA1 homolog

      See identical proteins and their annotated locations for NP_998305.1

      Status: PROVISIONAL

      Source sequence(s)
      BC053254
      UniProtKB/TrEMBL
      Q7T349
      Related
      ENSDARP00000067052.5, ENSDART00000067053.6
      Conserved Domains (1) summary
      pfam04652
      Location:15 → 145
      Vta1; Vta1 like

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      37300725..37376660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005160655.4 → XP_005160712.1  vacuolar protein sorting-associated protein VTA1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A2R8RJY3, A0A8M2B7S2
      Related
      ENSDARP00000146885.1, ENSDART00000180789.1
      Conserved Domains (1) summary
      pfam04652
      Location:15 → 145
      Vta1; Vta1 like
    Nucleotide Protein
    Heading Accession and Version

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