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    cped1 cadherin-like and PC-esterase domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 565332, updated on 9-Dec-2024

    Summary

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    Official Symbol
    cped1provided by ZNC
    Official Full Name
    cadherin-like and PC-esterase domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041210-247
    See related
    Ensembl:ENSDARG00000045747 AllianceGenome:ZFIN:ZDB-GENE-041210-247
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-152m4.1
    Summary
    Orthologous to human CPED1 (cadherin like and PC-esterase domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See cped1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (10617061..10705422)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (10617989..10706704)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene tetraspanin 12 Neighboring gene inhibitor of growth family, member 3 Neighboring gene wingless-type MMTV integration site family, member 16 Neighboring gene si:dkey-207j16.5 Neighboring gene stabilin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. wnt16 regulates spine and muscle morphogenesis through parallel signals from notochord and dermomyotome. Watson CJ, et al. PLoS Genet, 2022 Nov. PMID 36346812, Free PMC Article
    2. A morpholino-based screen to identify novel genes involved in craniofacial morphogenesis. Melvin VS, et al. Dev Dyn, 2013 Jul. PMID 23559552, Free PMC Article
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C7orf58; cadherin-like and PC-esterase domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      10617061..10705422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068220747.1 → XP_068076848.1  cadherin-like and PC-esterase domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8N7TBF5, F1Q4M6
      Related
      ENSDARP00000067250.4, ENSDART00000067251.6

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394551.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      18304..36383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471532.1 → XP_021327207.1  cadherin-like and PC-esterase domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M9P8P4
    Nucleotide Protein Strain
    Heading Accession and Version

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