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    • Showing Current items.

    si:dkey-238c7.12 si:dkey-238c7.12 [ Danio rerio (zebrafish) ]

    Gene ID: 795545, updated on 12-Sep-2024

    Summary

    Official Symbol
    si:dkey-238c7.12provided by ZNC
    Official Full Name
    si:dkey-238c7.12provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8330
    See related
    Ensembl:ENSDARG00000095556 AllianceGenome:ZFIN:ZDB-GENE-030131-8330
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    d93; fb07c06; fb09a04; fb09a06; wu:fb07c06; wu:fb09a04; wu:fb09a06
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    Genomic context

    See si:dkey-238c7.12 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (7565995..7567957)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (7607060..7609022)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor 5 Neighboring gene zgc:77650 Neighboring gene si:dkeyp-1h4.9 Neighboring gene si:dkey-238c7.13

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104060.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AW184670, BM072518, EH505716
      Related
      ENSDART00000140784.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      7565995..7567957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395003.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      215935..217820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395333.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      14185..16147
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)