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    dcun1d5 DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) [ Danio rerio (zebrafish) ]

    Gene ID: 406622, updated on 9-Dec-2024

    Summary

    Official Symbol
    dcun1d5provided by ZNC
    Official Full Name
    DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2603
    See related
    Ensembl:ENSDARG00000100363 AllianceGenome:ZFIN:ZDB-GENE-040426-2603
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:65817; zgc:76970; wu:fi47e09
    Summary
    Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in protein neddylation. Predicted to be located in cytoplasm and spindle. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D5 (defective in cullin neddylation 1 domain containing 5). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See dcun1d5 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (3535852..3552466, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (3438767..3455398, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene calpain 5a Neighboring gene olfactory marker protein a Neighboring gene uncharacterized LOC100538302 Neighboring gene eukaryotic translation initiation factor 2A Neighboring gene stress-associated endoplasmic reticulum protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables cullin family protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ubiquitin conjugating enzyme binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ubiquitin-like protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in protein neddylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in spindle IEA
    Inferred from Electronic Annotation
    more info
     
    part_of ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213331.1NP_998496.1  DCN1-like protein 5

      See identical proteins and their annotated locations for NP_998496.1

      Status: PROVISIONAL

      Source sequence(s)
      BC067148
      UniProtKB/TrEMBL
      A0A2R8QK43, Q6NXC6, Q6PH35
      Related
      ENSDARP00000138799.1, ENSDART00000161197.2
      Conserved Domains (1) summary
      pfam03556
      Location:116225
      Cullin_binding; Cullin binding

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      3535852..3552466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005173607.4XP_005173664.1  DCN1-like protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A0R4ITQ3, A0A8M2BKU6
      Related
      ENSDARP00000137848.1, ENSDART00000170260.2
      Conserved Domains (1) summary
      pfam03556
      Location:133242
      Cullin_binding; Cullin binding