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    mpdu1b mannose-P-dolichol utilization defect 1b [ Danio rerio (zebrafish) ]

    Gene ID: 415220, updated on 9-Dec-2024

    Summary

    Official Symbol
    mpdu1bprovided by ZNC
    Official Full Name
    mannose-P-dolichol utilization defect 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040625-135
    See related
    Ensembl:ENSDARG00000040265 AllianceGenome:ZFIN:ZDB-GENE-040625-135
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb18d03; zgc:86765; wu:fb18d03
    Summary
    Predicted to be involved in oligosaccharide biosynthetic process. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation If. Orthologous to human MPDU1 (mannose-P-dolichol utilization defect 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See mpdu1b in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (26466846..26473480)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (26195653..26202287)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene si:dkey-3k24.8 Neighboring gene transmembrane 4 L six family member 21b Neighboring gene metallo-beta-lactamase domain containing 1 Neighboring gene SRY-box transcription factor 19b Neighboring gene small nucleolar RNA SNORD10 Neighboring gene eukaryotic translation initiation factor 4A1A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in oligosaccharide biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    mannose-P-dolichol utilization defect 1b

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002130.1NP_001002130.1  mannose-P-dolichol utilization defect 1b

      See identical proteins and their annotated locations for NP_001002130.1

      Status: PROVISIONAL

      Source sequence(s)
      BC071434
      UniProtKB/TrEMBL
      A0A8M1MZY1, Q6IQH2
      Related
      ENSDARP00000058907.3, ENSDART00000058908.4
      Conserved Domains (2) summary
      TIGR00951
      Location:47242
      2A43; Lysosomal Cystine Transporter
      pfam04193
      Location:50108
      PQ-loop; PQ loop repeat

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      26466846..26473480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)