si:ch73-55i23.1 si:ch73-55i23.1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch73-55i23.1provided by ZNC
Official Full Name: si:ch73-55i23.1provided by ZNC
Primary source: ZFIN:ZDB-GENE-140106-38
See related: Ensembl:ENSDARG00000042090 AllianceGenome:ZFIN:ZDB-GENE-140106-38
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zmp:0000001078
Summary: Predicted to enable phospholipase activity. Predicted to act upstream of or within phospholipid catabolic process. Orthologous to human PLA2G4C (phospholipase A2 group IVC). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

See si:ch73-55i23.1 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (1911811..1924217)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (1646489..1658892)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables calcium ion binding	IBA Inferred from Biological aspect of Ancestor more info
enables calcium-dependent phospholipase A2 activity	IBA Inferred from Biological aspect of Ancestor more info
enables calcium-dependent phospholipid binding	IBA Inferred from Biological aspect of Ancestor more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables phospholipase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in glycerophospholipid catabolic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within lipid catabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within lipid metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within phospholipid catabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nuclear envelope	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC100148818

Names: phospholipase A2, group IVC (cytosolic, calcium-independent)-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001204308.2 → NP_001191237.2 uncharacterized protein LOC100148818

Status: VALIDATED

Source sequence(s)

CU929196

UniProtKB/TrEMBL

A0A0R4IGS2, A0A8M1P1U7

Related

ENSDARP00000134695.1, ENSDART00000172233.3

Conserved Domains (1) summary

cl11396
Location:9 → 547

Patatin_and_cPLA2; Patatins and Phospholipases