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    nup210 nucleoporin 210 [ Danio rerio (zebrafish) ]

    Gene ID: 570945, updated on 9-Dec-2024

    Summary

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    Official Symbol
    nup210provided by ZNC
    Official Full Name
    nucleoporin 210provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050208-132
    See related
    Ensembl:ENSDARG00000063333 AllianceGenome:ZFIN:ZDB-GENE-050208-132
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7141335
    Summary
    Enables protein-macromolecule adaptor activity. Acts upstream of or within myoblast maturation. Part of nuclear pore. Orthologous to human NUP210 (nucleoporin 210). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See nup210 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (4483125..4557872)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (4544233..4618624)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene si:ch73-142c19.1 Neighboring gene protein Wnt-7a Neighboring gene IQ motif and Sec7 domain ArfGEF 1a Neighboring gene glycoprotein IX platelet

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Nuclear Pores Regulate Muscle Development and Maintenance by Assembling a Localized Mef2C Complex. Raices M, et al. Dev Cell, 2017 Jun 5. PMID 28586646, Free PMC Article
    2. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables protein-macromolecule adaptor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein-macromolecule adaptor activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within myoblast maturation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of nuclear pore IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore membrane glycoprotein 210

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      4483125..4557872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002667560.7 → XP_002667606.3  nuclear pore membrane glycoprotein 210

      UniProtKB/TrEMBL
      A0A8M1RIB6, F1QC46
      Related
      ENSDARP00000086821.5, ENSDART00000092389.7
      Conserved Domains (1) summary
      pfam02368
      Location:1069 → 1135
      Big_2; Bacterial Ig-like domain (group 2)
    Nucleotide Protein Strain
    Heading Accession and Version

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