The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference GRCz11 Primary Assembly

Genomic

1. NC_007125.7 Reference GRCz11 Primary Assembly

   Range

   16813747..17027395

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_009291003.4 → XP_009289278.1  LIM and calponin homology domains-containing protein 1 isoform X1

   UniProtKB/TrEMBL

   A0A8M3B082, A0A8M9PZJ6

   Conserved Domains (4) summary

   cd00014
   Location:38 → 153

   CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...

   pfam00412
   Location:1128 → 1190

   LIM; LIM domain

   pfam15949
   Location:266 → 545

   DUF4757; Domain of unknown function (DUF4757)

   cl20817
   Location:909 → 946

   GBP_C; Guanylate-binding protein, C-terminal domain

2. XM_068213320.1 → XP_068069421.1  LIM and calponin homology domains-containing protein 1 isoform X3

   UniProtKB/TrEMBL

   A0A8M9QGL6

3. XM_068213321.1 → XP_068069422.1  LIM and calponin homology domains-containing protein 1 isoform X4

   UniProtKB/TrEMBL

   A0A8M9QPD2

4. XM_068213319.1 → XP_068069420.1  LIM and calponin homology domains-containing protein 1 isoform X2

   UniProtKB/TrEMBL

   A0A8M9QBD4

5. XM_068213322.1 → XP_068069423.1  LIM and calponin homology domains-containing protein 1 isoform X5

   UniProtKB/TrEMBL

   A0A8M9QKV9

6. XM_009291007.4 → XP_009289282.1  LIM and calponin homology domains-containing protein 1 isoform X6

   UniProtKB/TrEMBL

   A0A8M3AHT4, A0A8M9PZJ6

   Conserved Domains (5) summary

   cd00014
   Location:38 → 153

   CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...

   PTZ00233
   Location:882 → 1016

   PTZ00233; variable surface protein Vir18; Provisional

   pfam00412
   Location:1013 → 1075

   LIM; LIM domain

   pfam15949
   Location:266 → 430

   DUF4757; Domain of unknown function (DUF4757)

   cl20817
   Location:794 → 831

   GBP_C; Guanylate-binding protein, C-terminal domain

7. XM_021481138.2 → XP_021336813.1  LIM and calponin homology domains-containing protein 1 isoform X9

   UniProtKB/TrEMBL

   A0A0R4IJJ4, A0A8M9QBD8, A0A8M9QKV9

   Related

   ENSDARP00000134427.1, ENSDART00000161201.2

   Conserved Domains (3) summary

   cd00014
   Location:38 → 153

   CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...

   pfam00412
   Location:950 → 1012

   LIM; LIM domain

   pfam15949
   Location:266 → 431

   DUF4757; Domain of unknown function (DUF4757)

8. XM_009291008.4 → XP_009289283.1  LIM and calponin homology domains-containing protein 1 isoform X7

   UniProtKB/TrEMBL

   A0A8M3ARW6, A0A8M9PZJ6

   Conserved Domains (5) summary

   cd00014
   Location:38 → 153

   CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...

   PTZ00233
   Location:870 → 1004

   PTZ00233; variable surface protein Vir18; Provisional

   pfam00412
   Location:1001 → 1063

   LIM; LIM domain

   pfam15949
   Location:266 → 418

   DUF4757; Domain of unknown function (DUF4757)

   cl20817
   Location:782 → 819

   GBP_C; Guanylate-binding protein, C-terminal domain

9. XM_068213323.1 → XP_068069424.1  LIM and calponin homology domains-containing protein 1 isoform X8

   UniProtKB/TrEMBL

   A0A8M9PZK0

The following Reference Sequences have been suppressed. Explain

These RefSeqs were suppressed for the cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links, or BLAST links (BLink), but may still be retrieved by clicking on their accession.version below.

1. NM_001114729.1: Suppressed sequence

   Description

   NM_001114729.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: LIMCH1 (GeneID:22998).