ptrhd1 peptidyl-tRNA hydrolase domain containing 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ptrhd1provided by ZNC
Official Full Name: peptidyl-tRNA hydrolase domain containing 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-081110-2
See related: Ensembl:ENSDARG00000016122 AllianceGenome:ZFIN:ZDB-GENE-081110-2
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: DKEY-34F16.3; si:dkey-34f16.5
Summary: Predicted to enable aminoacyl-tRNA hydrolase activity. Orthologous to human PTRHD1 (peptidyl-tRNA hydrolase domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 20

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (36797979..36799981, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (36895100..36897102, complement)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables aminoacyl-tRNA hydrolase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: putative peptidyl-tRNA hydrolase PTRHD1

NP_001025446.1

EC 3.1.1.29

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001030275.1 → NP_001025446.1 putative peptidyl-tRNA hydrolase PTRHD1

Status: PROVISIONAL

Source sequence(s)

BX248390

UniProtKB/TrEMBL

A0A8M1N7G8, Q5RIN6

Related

ENSDARP00000022446.6, ENSDART00000015190.8

Conserved Domains (1) summary

cd02429
Location:12 → 125

PTH2_like; Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in ...