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    si:ch211-117c9.5 si:ch211-117c9.5 [ Danio rerio (zebrafish) ]

    Gene ID: 100150452, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-117c9.5provided by ZNC
    Official Full Name
    si:ch211-117c9.5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110408-2
    See related
    Ensembl:ENSDARG00000071235 AllianceGenome:ZFIN:ZDB-GENE-110408-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable gamma-aminobutyric acid:sodium:chloride symporter activity. Predicted to be involved in amino acid transport and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-117c9.5 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (6795493..6841245)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (6861503..6907273)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene prostaglandin E synthase 3b (cytosolic) Neighboring gene secreted frizzled-related protein 5 Neighboring gene prolyl 4-hydroxylase, transmembrane a Neighboring gene finTRIM family, member 59 Neighboring gene finTRIM family, member 58

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish. Guerra A, et al. Elife, 2018 May 15. PMID 29762122, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables gamma-aminobutyric acid:sodium:chloride symporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in sodium ion transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    sodium- and chloride-dependent creatine transporter 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      6795493..6841245
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001922928.8 → XP_001922963.4  sodium- and chloride-dependent creatine transporter 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M1QR72, A0A8M3B5X2, E7EXM3
      Related
      ENSDARP00000086564.5, ENSDART00000092131.7
      Conserved Domains (1) summary
      cl00456
      Location:63 → 652
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. XM_068216856.1 → XP_068072957.1  sodium- and chloride-dependent creatine transporter 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M3B5X2
    Nucleotide Protein
    Heading Accession and Version

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