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    setd9 SET domain containing 9 [ Danio rerio (zebrafish) ]

    Gene ID: 793111, updated on 9-Dec-2024

    Summary

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    Official Symbol
    setd9provided by ZNC
    Official Full Name
    SET domain containing 9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-120727-15
    See related
    AllianceGenome:ZFIN:ZDB-GENE-120727-15
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human SETD9 (SET domain containing 9). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See setd9 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (2684039..2694322)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (2656869..2667151)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene chemokine (C-C motif) ligand 27b Neighboring gene pyridoxal (pyridoxine, vitamin B6) phosphatase Neighboring gene mesoderm induction early response 1, family member 3 a Neighboring gene G protein-coupled receptor kinase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The Kdm/Kmt gene families in the self-fertilizing mangrove rivulus fish, Kryptolebias marmoratus, suggest involvement of histone methylation machinery in development and reproduction. Fellous A, et al. Gene, 2019 Mar 1. PMID 30458291
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    SET domain-containing protein 9
    Names
    unm_hu7858

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      2684039..2694322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001332769.6 → XP_001332805.2  SET domain-containing protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8M1PRU1
      Conserved Domains (1) summary
      pfam00856
      Location:250 → 283
      SET; SET domain

    2. XM_009305071.4 → XP_009303346.1  SET domain-containing protein 9 isoform X2

      UniProtKB/TrEMBL
      A0A8M3BCS1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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