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    slco1f1 solute carrier organic anion transporter family, member 1F1 [ Danio rerio (zebrafish) ]

    Gene ID: 405853, updated on 9-Dec-2024

    Summary

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    Official Symbol
    slco1f1provided by ZNC
    Official Full Name
    solute carrier organic anion transporter family, member 1F1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2192
    See related
    Ensembl:ENSDARG00000102283 AllianceGenome:ZFIN:ZDB-GENE-040426-2192
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:85924
    Summary
    Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be active in basolateral plasma membrane. Is expressed in kidney and ovary. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See slco1f1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (72092462..72105518, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (70576833..70589784, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene protein mono-ADP-ribosyltransferase PARP11 Neighboring gene pyridine nucleotide-disulphide oxidoreductase domain 1 Neighboring gene islet amyloid polypeptide Neighboring gene solute carrier organic anion transporter family member 1C1 Neighboring gene solute carrier organic anion transporter family, member 1F4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Zebrafish Oatp-mediated transport of microcystin congeners. Steiner K, et al. Arch Toxicol, 2016 May. PMID 26055554, Free PMC Article
    2. Organic anion transporting polypeptides (OATP) in zebrafish (Danio rerio): Phylogenetic analysis and tissue distribution. Popovic M, et al. Comp Biochem Physiol A Mol Integr Physiol, 2010 Mar. PMID 19931635
    3. Tissue distribution and thyroid hormone effects on mRNA abundance for membrane transporters Mct8, Mct10, and organic anion-transporting polypeptides (Oatps) in a teleost fish. Muzzio AM, et al. Comp Biochem Physiol A Mol Integr Physiol, 2014 Jan. PMID 24113777, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC85924

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    solute carrier organic anion transporter family, member 1F1
    Names
    Oatp1f1
    solute carrier anion transporting family member 1f1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212917.3 → NP_998082.2  solute carrier organic anion transporter family, member 1F1

      Status: PROVISIONAL

      Source sequence(s)
      LO017820, LO017825
      UniProtKB/TrEMBL
      A0A0R4IBD9, A0A8M6YXX6, A0A8N1Z406
      Related
      ENSDARP00000132188.1, ENSDART00000167048.2
      Conserved Domains (3) summary
      cd06174
      Location:91 → 336
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      cd01330
      Location:363 → 415
      KAZAL_SLC21; The kazal-type serine protease inhibitor domain has been detected in an extracellular loop region of solute carrier 21 (SLC21) family members (organic anion transporters) , which may regulate the specificity of anion uptake. The KAZAL_SLC21 domain is a ...
      pfam03137
      Location:1 → 528
      OATP; Organic Anion Transporter Polypeptide (OATP) family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      72092462..72105518 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017354986.3 → XP_017210475.2  solute carrier organic anion transporter family, member 1F1 isoform X1

      UniProtKB/TrEMBL
      A0A8M6YXX6
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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