U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    si:dkey-171c9.3 si:dkey-171c9.3 [ Danio rerio (zebrafish) ]

    Gene ID: 100005938, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    si:dkey-171c9.3provided by ZNC
    Official Full Name
    si:dkey-171c9.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141216-372
    See related
    Ensembl:ENSDARG00000102228 AllianceGenome:ZFIN:ZDB-GENE-141216-372
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable protein kinase A binding activity. Predicted to be involved in protein localization. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See si:dkey-171c9.3 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (22968756..22981761, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (22697599..22710639, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene chloride channel, voltage-sensitive 5b Neighboring gene TNF superfamily member 10, like Neighboring gene cyclin B3 Neighboring gene uncharacterized LOC137490270

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables protein kinase A binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein localization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein si:dkey-171c9.3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      22968756..22981761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477784.2 → XP_021333459.1  uncharacterized protein si:dkey-171c9.3

      UniProtKB/TrEMBL
      A0A0R4IUW3, A0A8M1PZB7
      Related
      ENSDARP00000138265.1, ENSDART00000167565.2

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394688.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      94902..107907 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001339501.8 → XP_001339537.1  uncharacterized protein si:dkey-171c9.3

      UniProtKB/TrEMBL
      A0A0R4IUW3, A0A8M1PZB7
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials