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    zgc:92140 zgc:92140 [ Danio rerio (zebrafish) ]

    Gene ID: 447854, updated on 9-Dec-2024

    Summary

    Official Symbol
    zgc:92140provided by ZNC
    Official Full Name
    zgc:92140provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040912-161
    See related
    Ensembl:ENSDARG00000098592 AllianceGenome:ZFIN:ZDB-GENE-040912-161
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human C1orf21 (chromosome 1 open reading frame 21). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See zgc:92140 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (19401085..19467167, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (19370668..19437155, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene macrophage expressed 1, tandem duplicate 2 Neighboring gene collagen beta(1-O)galactosyltransferase 2b Neighboring gene ER degradation enhancer, mannosidase alpha-like 3 Neighboring gene N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC447854

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004593.1NP_001004593.1  uncharacterized protein LOC447854

      See identical proteins and their annotated locations for NP_001004593.1

      Status: PREDICTED

      Source sequence(s)
      BC081606
      UniProtKB/TrEMBL
      A0A0R4ILD0, A0A2R8QN91, Q66I00
      Related
      ENSDARP00000134738.1, ENSDART00000162010.3
      Conserved Domains (1) summary
      pfam15389
      Location:2112
      DUF4612; Domain of unknown function (DUF4612)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      19401085..19467167 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009303890.4XP_009302165.1  uncharacterized protein LOC447854 isoform X1

      See identical proteins and their annotated locations for XP_009302165.1

      UniProtKB/TrEMBL
      A0A0R4ILD0, A0A2R8QN91, Q66I00
      Conserved Domains (1) summary
      pfam15389
      Location:2112
      DUF4612; Domain of unknown function (DUF4612)
    2. XM_068222931.1XP_068079032.1  uncharacterized protein LOC447854 isoform X1

      UniProtKB/TrEMBL
      A0A0R4ILD0, A0A2R8QN91, Q66I00
    3. XM_009303892.4XP_009302167.1  uncharacterized protein LOC447854 isoform X1

      See identical proteins and their annotated locations for XP_009302167.1

      UniProtKB/TrEMBL
      A0A0R4ILD0, A0A2R8QN91, Q66I00
      Related
      ENSDARP00000157014.1, ENSDART00000184037.1
      Conserved Domains (1) summary
      pfam15389
      Location:2112
      DUF4612; Domain of unknown function (DUF4612)