terb1 telomere repeat binding bouquet formation protein 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: terb1provided by ZNC
Official Full Name: telomere repeat binding bouquet formation protein 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-060503-732
See related: Ensembl:ENSDARG00000058587 AllianceGenome:ZFIN:ZDB-GENE-060503-732
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ccdc79; si:dkey-30c15.5
Summary: Predicted to be involved in homologous chromosome pairing at meiosis and meiotic attachment of telomere to nuclear envelope. Predicted to act upstream of or within meiotic cell cycle. Predicted to be located in chromosome, telomeric region and nuclear inner membrane. Predicted to be part of shelterin complex. Human ortholog(s) of this gene implicated in spermatogenic failure 60. Orthologous to human TERB1 (telomere repeat binding bouquet formation protein 1). [provided by Alliance of Genome Resources, Dec 2024]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (7458729..7479154)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (7499794..7520219)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in homologous chromosome pairing at meiosis	IBA Inferred from Biological aspect of Ancestor more info
involved_in homologous chromosome pairing at meiosis	ISS Inferred from Sequence or Structural Similarity more info
involved_in meiotic attachment of telomere to nuclear envelope	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within meiotic attachment of telomere to nuclear envelope	IEA Inferred from Electronic Annotation more info
involved_in meiotic attachment of telomere to nuclear envelope	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within meiotic cell cycle	IEA Inferred from Electronic Annotation more info
involved_in meiotic telomere clustering	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in chromosome	IEA Inferred from Electronic Annotation more info
located_in chromosome, telomeric region	IEA Inferred from Electronic Annotation more info
located_in chromosome, telomeric region	ISS Inferred from Sequence or Structural Similarity more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in nuclear inner membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of shelterin complex	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: telomere repeats-binding bouquet formation protein 1

Names: coiled-coil domain containing 79; coiled-coil domain-containing protein 79

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089382.1 → NP_001082851.1 telomere repeats-binding bouquet formation protein 1

See identical proteins and their annotated locations for NP_001082851.1

Status: PROVISIONAL

Source sequence(s)

BX571879

UniProtKB/Swiss-Prot

A3KQ98, Q1LX29

Related

ENSDARP00000118262.1, ENSDART00000142270.3

Conserved Domains (3) summary

cd11658
Location:754 → 799

SANT_DMAP1_like; SANT/myb-like domain of Human Dna Methyltransferase 1 Associated Protein 1-like

cd00020
Location:284 → 353

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

sd00043
Location:281 → 314

ARM; armadillo repeat [structural motif]