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    pgm2l1 phosphoglucomutase 2-like 1 [ Danio rerio (zebrafish) ]

    Gene ID: 449945, updated on 9-Dec-2024

    Summary

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    Official Symbol
    pgm2l1provided by ZNC
    Official Full Name
    phosphoglucomutase 2-like 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041008-205
    See related
    Ensembl:ENSDARG00000014704 AllianceGenome:ZFIN:ZDB-GENE-041008-205
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7140576; zgc:198285
    Summary
    Predicted to enable glucose-1,6-bisphosphate synthase activity. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human PGM2L1 (phosphoglucomutase 2 like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See pgm2l1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (5116179..5148791)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (5125032..5157644)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family G (WHITE), member 1 Neighboring gene myxovirus (influenza virus) resistance F Neighboring gene odorant receptor, family 64, subfamily D, member 1 Neighboring gene odorant receptor, family 62, subfamily C, member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Dichlorvos exposure results in large scale disruption of energy metabolism in the liver of the zebrafish, Danio rerio. Bui-Nguyen TM, et al. BMC Genomics, 2015 Oct 24. PMID 26499117, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables glucose-1,6-bisphosphate synthase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables glucose-1,6-bisphosphate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables intramolecular phosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphoglucomutase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    glucose 1,6-bisphosphate synthase
    NP_001091955.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098485.1 → NP_001091955.1  glucose 1,6-bisphosphate synthase

      See identical proteins and their annotated locations for NP_001091955.1

      Status: PROVISIONAL

      Source sequence(s)
      AL954822
      UniProtKB/TrEMBL
      A0A8M1NEU2, B7ZVE8
      Related
      ENSDARP00000092712.3, ENSDART00000101937.6
      Conserved Domains (2) summary
      cd05799
      Location:61 → 600
      PGM2; This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and ...
      PTZ00150
      Location:22 → 618
      PTZ00150; phosphoglucomutase-2-like protein; Provisional

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      5116179..5148791
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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