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    ino80c INO80 complex subunit C [ Danio rerio (zebrafish) ]

    Gene ID: 791987, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ino80cprovided by ZNC
    Official Full Name
    INO80 complex subunit Cprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040625-97
    See related
    Ensembl:ENSDARG00000055719 AllianceGenome:ZFIN:ZDB-GENE-040625-97
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj61b08; zgc:86850; wu:fj61b08
    Summary
    Predicted to be involved in chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Orthologous to human INO80C (INO80 complex subunit C). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ino80c in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (26850978..26855945, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (26977536..26982503, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene tripartite motif containing 35-29 Neighboring gene uncharacterized LOC100333085 Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 Neighboring gene transmembrane protein 245

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Building the vertebrate codex using the gene breaking protein trap library. Ichino N, et al. Elife, 2020 Aug 11. PMID 32779569, Free PMC Article
    2. E2f5 is a versatile transcriptional activator required for spermatogenesis and multiciliated cell differentiation in zebrafish. Xie H, et al. PLoS Genet, 2020 Mar. PMID 32196499, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC86850

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin remodeling IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Ino80 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    INO80 complex subunit C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002108.2 → NP_001002108.2  INO80 complex subunit C

      Status: VALIDATED

      Source sequence(s)
      EH554982, EH565174
      UniProtKB/TrEMBL
      A0A8M1MZU6, F1R4X0
      Related
      ENSDARP00000072582.4, ENSDART00000078119.6
      Conserved Domains (1) summary
      cl02154
      Location:101 → 205
      YL1_C; YL1 nuclear protein C-terminal domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      26850978..26855945 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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