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    sfxn2 sideroflexin 2 [ Danio rerio (zebrafish) ]

    Gene ID: 334757, updated on 9-Dec-2024

    Summary

    Official Symbol
    sfxn2provided by ZNC
    Official Full Name
    sideroflexin 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2831
    See related
    Ensembl:ENSDARG00000017960 AllianceGenome:ZFIN:ZDB-GENE-040426-2831
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:55508; zgc:77081; wu:fa03a09
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be involved in serine import into mitochondrion. Predicted to act upstream of or within monoatomic ion transport and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be active in mitochondrial inner membrane. Orthologous to human SFXN2 (sideroflexin 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See sfxn2 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (33975182..33988888)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (33874144..33887902)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 8b Neighboring gene ADP ribosylation factor like GTPase 3b Neighboring gene TIMP metallopeptidase inhibitor 2a Neighboring gene uncharacterized LOC137496773

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC113993

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane  
    is_active_in mitochondrial inner membrane  
    located_in mitochondrion  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212730.1 → NP_997895.1  sideroflexin-2

      See identical proteins and their annotated locations for NP_997895.1

      Status: PROVISIONAL

      Source sequence(s)
      BC066638
      UniProtKB/TrEMBL
      A8E505, Q6NYD2
      Related
      ENSDARP00000036949.5, ENSDART00000036649.8
      Conserved Domains (1) summary
      pfam03820
      Location:14 → 321
      Mtc; Tricarboxylate carrier

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      33975182..33988888
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480030.2 → XP_021335705.1  sideroflexin-2 isoform X1

      UniProtKB/TrEMBL
      A8E505, Q6NYD2
      Conserved Domains (1) summary
      pfam03820
      Location:14 → 321
      Mtc; Tricarboxylate carrier
    2. XM_005169471.5 → XP_005169528.1  sideroflexin-2 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BGR6
      Conserved Domains (1) summary
      pfam03820
      Location:43 → 310
      Mtc; Tricarboxylate carrier

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394856.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      109462..124909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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