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    si:dkey-88l16.3 si:dkey-88l16.3 [ Danio rerio (zebrafish) ]

    Gene ID: 796880, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkey-88l16.3provided by ZNC
    Official Full Name
    si:dkey-88l16.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6015
    See related
    AllianceGenome:ZFIN:ZDB-GENE-030131-6015
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi30e01; wu:fi30e01; si:dkey-88l16.4
    Summary
    Predicted to enable hormone binding activity. Acts upstream of or within cranial skeletal system development. Predicted to be located in membrane. Predicted to be part of receptor complex. Predicted to be active in apical plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-88l16.3 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    57
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (14942589..15017042)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (14984489..15058914)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496541 Neighboring gene SMAD family member 2 Neighboring gene si:dkey-88l16.5 Neighboring gene uncharacterized LOC100537265

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Novel Ethanol-Sensitive Mutants Identified in an F3 Forward Genetic Screen. Swartz ME, et al. Alcohol Clin Exp Res, 2020 Jan. PMID 31742718, Free PMC Article
    2. Analysis of protein expression in developmental toxicity induced by MeHg in zebrafish. Cuello S, et al. Analyst, 2012 Nov 21. PMID 23014190
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cranial skeletal system development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    low-density lipoprotein receptor-related protein 1B; si:dkey-88l16.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      14942589..15017042
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068224065.1 → XP_068080166.1  low-density lipoprotein receptor-related protein 1B

    Nucleotide Protein Strain
    Heading Accession and Version

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