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    rab41 RAB41, member RAS oncogene family [ Danio rerio (zebrafish) ]

    Gene ID: 406674, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rab41provided by ZNC
    Official Full Name
    RAB41, member RAS oncogene familyprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2686
    See related
    Ensembl:ENSDARG00000029885 AllianceGenome:ZFIN:ZDB-GENE-040426-2686
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:63637; wu:fi30c11
    Summary
    Predicted to enable GTPase activity. Predicted to be involved in several processes, including Golgi vesicle transport; protein localization to Golgi membrane; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Orthologous to human RAB41 (RAB41, member RAS oncogene family). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human all
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    Genomic context

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    See rab41 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (33280718..33297314, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (32940404..32957043, complement)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene PDZ domain containing 11 Neighboring gene START domain containing 14 Neighboring gene septin 6 Neighboring gene sosondowah ankyrin repeat domain family d

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A high-resolution mRNA expression time course of embryonic development in zebrafish. White RJ, et al. Elife, 2017 Nov 16. PMID 29144233, Free PMC Article
    2. A plasmid library of full-length zebrafish rab proteins for in vivo cell biology. Hall TE, et al. Cell Logist, 2017. PMID 28396820, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC113973

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in intra-Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein localization to Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in retrograde transport, endosome to Golgi IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in endomembrane system IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ras-related protein Rab-41

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213365.1 → NP_998530.1  ras-related protein Rab-41

      See identical proteins and their annotated locations for NP_998530.1

      Status: PROVISIONAL

      Source sequence(s)
      BC058059
      UniProtKB/TrEMBL
      Q6PEH6
      Related
      ENSDARP00000045554.3, ENSDART00000045555.5
      Conserved Domains (2) summary
      smart00175
      Location:17 → 174
      RAB; Rab subfamily of small GTPases
      cd01861
      Location:17 → 177
      Rab6; Rab GTPase family 6 (Rab6)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      33280718..33297314 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005173246.5 → XP_005173303.1  ras-related protein Rab-41 isoform X3

      See identical proteins and their annotated locations for XP_005173303.1

      UniProtKB/TrEMBL
      A0A8M2BKK6, Q4V957
      Related
      ENSDARP00000069541.5, ENSDART00000075056.7
      Conserved Domains (2) summary
      smart00175
      Location:17 → 174
      RAB; Rab subfamily of small GTPases
      cd01861
      Location:17 → 177
      Rab6; Rab GTPase family 6 (Rab6)

    2. XM_005173245.5 → XP_005173302.1  ras-related protein Rab-41 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BKK4, E9QE54
      Related
      ENSDARP00000117395.1, ENSDART00000138294.2
      Conserved Domains (2) summary
      smart00175
      Location:17 → 174
      RAB; Rab subfamily of small GTPases
      cd01861
      Location:17 → 177
      Rab6; Rab GTPase family 6 (Rab6)

    3. XM_005173247.5 → XP_005173304.1  ras-related protein Rab-41 isoform X2

      UniProtKB/TrEMBL
      A0A2R8QLH1, A0A8M2BKK1
      Conserved Domains (2) summary
      smart00175
      Location:17 → 174
      RAB; Rab subfamily of small GTPases
      cd01861
      Location:17 → 177
      Rab6; Rab GTPase family 6 (Rab6)

    RNA

    1. XR_658191.4 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394917.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      244395..261125 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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