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    fhdc2 FH2 domain containing 2 [ Danio rerio (zebrafish) ]

    Gene ID: 569206, updated on 9-Dec-2024

    Summary

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    Official Symbol
    fhdc2provided by ZNC
    Official Full Name
    FH2 domain containing 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091118-76
    See related
    Ensembl:ENSDARG00000099767 AllianceGenome:ZFIN:ZDB-GENE-091118-76
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-102m7.1
    Summary
    Predicted to be involved in actin filament polymerization. Predicted to be active in actin filament. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See fhdc2 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (14806899..14828505)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (14501288..14522936)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487515 Neighboring gene O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 Neighboring gene si:dkey-102m7.3 Neighboring gene uncharacterized LOC101882685 Neighboring gene small nucleolar RNA SNORA74 Neighboring gene stem-loop histone mRNA binding protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in actin filament polymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in actin filament IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    formin-J

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      14806899..14828505
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009307807.4 → XP_009306082.1  formin-J

      See identical proteins and their annotated locations for XP_009306082.1

      UniProtKB/TrEMBL
      A0A8M3AZM2, E7FGI9
      Related
      ENSDARP00000132283.1, ENSDART00000169235.2
      Conserved Domains (1) summary
      pfam02181
      Location:40 → 406
      FH2; Formin Homology 2 Domain
    Nucleotide Protein
    Heading Accession and Version

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