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    zgc:153345 zgc:153345 [ Danio rerio (zebrafish) ]

    Gene ID: 566129, updated on 9-Dec-2024

    Summary

    Official Symbol
    zgc:153345provided by ZNC
    Official Full Name
    zgc:153345provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061103-487
    See related
    Ensembl:ENSDARG00000055622 AllianceGenome:ZFIN:ZDB-GENE-061103-487
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See zgc:153345 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (33393829..33403522)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (33449969..33459662)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase 2, NAD (mitochondrial) Neighboring gene microRNA 301a-1 Neighboring gene microRNA 130a-1 Neighboring gene spindle and kinetochore associated complex subunit 2 Neighboring gene uncharacterized LOC137496526 Neighboring gene ryanodine receptor 1a (skeletal) Neighboring gene interleukin 2 receptor, gamma a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC153345

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTPase activator activity  
    enables molecular_function  

    General protein information

    Preferred Names
    uncharacterized protein LOC566129

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077613.2 → NP_001071081.2  uncharacterized protein LOC566129

      Status: VALIDATED

      Source sequence(s)
      BX088525
      UniProtKB/TrEMBL
      A0A0R4IRT8, A0A8N1YXS7
      Related
      ENSDARP00000138086.2, ENSDART00000163458.2
      Conserved Domains (1) summary
      cl02570
      Location:53 → 263
      RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      33393829..33403522
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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