slc35e1 solute carrier family 35 member E1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc35e1provided by ZNC
Official Full Name: solute carrier family 35 member E1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2033
See related: Ensembl:ENSDARG00000011945 AllianceGenome:ZFIN:ZDB-GENE-040426-2033
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc05g11; fc55b08; zgc:55838; wu:fc05g11; wu:fc55b08
Summary: Predicted to enable antiporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E1 (solute carrier family 35 member E1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 11

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	11	NC_007122.7 (5499614..5512719)
105	previous assembly	GRCz10 (GCF_000002035.5)	11	NC_007122.6 (5553308..5566413)

Chromosome 11 - NC_007122.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables antiporter activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in Golgi apparatus	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: solute carrier family 35 member E1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213074.1 → NP_998239.1 solute carrier family 35 member E1

See identical proteins and their annotated locations for NP_998239.1

Status: PROVISIONAL

Source sequence(s)

BC046896

UniProtKB/TrEMBL

A0A8M1PIP2, Q802Y0

Related

ENSDARP00000013733.6, ENSDART00000027850.8

Conserved Domains (3) summary

pfam00892
Location:158 → 303

EamA; EamA-like transporter family

pfam03151
Location:14 → 303

TPT; Triose-phosphate Transporter family

cl23754
Location:32 → 151

EamA; EamA-like transporter family