laptm4a lysosomal protein transmembrane 4 alpha [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: laptm4aprovided by ZNC
Official Full Name: lysosomal protein transmembrane 4 alphaprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-1024
See related: Ensembl:ENSDARG00000006397 AllianceGenome:ZFIN:ZDB-GENE-030131-1024
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fb57c07; wu:fj99e08
Summary: Predicted to be located in endomembrane system and membrane. Predicted to be active in lysosomal membrane. Is expressed in adaxial cell; hypaxial myotome region; myotome; pectoral fin musculature; and somite. Orthologous to human LAPTM4A (lysosomal protein transmembrane 4 alpha). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 20

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (43775793..43786433, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (43878715..43889355, complement)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fj99e08.x1 (e-PCR)
- UniSTS:200474

fb57c07.x1 (e-PCR)
- UniSTS:203335

AI477511 (e-PCR)
- UniSTS:206458

fk54g07.x1 (e-PCR)
- UniSTS:201175

Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in endomembrane system	IEA Inferred from Electronic Annotation more info
is_active_in lysosomal membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: lysosomal-associated transmembrane protein 4A

Names: lysosomal-associated protein transmembrane 4 alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.