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    stk11ip serine/threonine kinase 11 interacting protein [ Danio rerio (zebrafish) ]

    Gene ID: 795019, updated on 9-Dec-2024

    Summary

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    Official Symbol
    stk11ipprovided by ZNC
    Official Full Name
    serine/threonine kinase 11 interacting proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1022
    See related
    Ensembl:ENSDARG00000070122 AllianceGenome:ZFIN:ZDB-GENE-040426-1022
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:56417
    Summary
    Predicted to enable kinase activity. Predicted to be involved in protein localization. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Orthologous to human STK11IP (serine/threonine kinase 11 interacting protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See stk11ip in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (20954401..20997767)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (18894173..18937542)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor binding protein 5a Neighboring gene insulin-like growth factor binding protein 2a Neighboring gene gap junction protein gamma 4a.1 Neighboring gene si:dkey-91f15.8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC56417

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein localization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    serine/threonine-protein kinase 11-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200288.2 → NP_956582.2  serine/threonine-protein kinase 11-interacting protein

      Status: INFERRED

      Source sequence(s)
      BX321894, CU694369
      UniProtKB/TrEMBL
      A0A0R4IIP9, A0A8M1PB23
      Related
      ENSDARP00000134690.2, ENSDART00000165806.2
      Conserved Domains (4) summary
      cd00116
      Location:110 → 286
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:166 → 188
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:210 → 268
      LRR_8; Leucine rich repeat
      pfam15904
      Location:6 → 95
      LIP1; LKB1 serine/threonine kinase interacting protein 1

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      20954401..20997767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005166228.5 → XP_005166285.1  serine/threonine-protein kinase 11-interacting protein isoform X1

      UniProtKB/TrEMBL
      A0A8M2BDQ2, F1Q5L2
      Related
      ENSDARP00000119375.2, ENSDART00000143248.4
      Conserved Domains (4) summary
      cd00116
      Location:110 → 273
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:166 → 188
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:210 → 268
      LRR_8; Leucine rich repeat
      pfam15904
      Location:6 → 95
      LIP1; LKB1 serine/threonine kinase interacting protein 1

    2. XM_021476945.2 → XP_021332620.1  serine/threonine-protein kinase 11-interacting protein isoform X2

      UniProtKB/TrEMBL
      A0A8M9QFK4
      Conserved Domains (3) summary
      COG4886
      Location:20 → 278
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:166 → 188
      LRR_1; leucine-rich repeat [structural motif]
      pfam15904
      Location:6 → 95
      LIP1; LKB1 serine/threonine kinase interacting protein 1

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394633.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      175240..218638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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