inpp4b inositol polyphosphate-4-phosphatase type II B [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: inpp4bprovided by ZNC
Official Full Name: inositol polyphosphate-4-phosphatase type II Bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-090312-97
See related: Ensembl:ENSDARG00000075201 AllianceGenome:ZFIN:ZDB-GENE-090312-97
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-236d22.1
Summary: Predicted to enable phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human INPP4B (inositol polyphosphate-4-phosphatase type II B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 24

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (52943111..53227341)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (52308402..52591148)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

G40906 (e-PCR)
- UniSTS:74811

NoName (e-PCR)
- UniSTS:238399

Z1173 (e-PCR)
- UniSTS:22653

fj33f04.x1 (e-PCR)
- UniSTS:199120

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: inositol polyphosphate 4-phosphatase type II; type II inositol 3,4-bisphosphate 4-phosphatase

Names: inositol polyphosphate-4-phosphatase, type II

XP_005160208.1

EC 3.1.3.66

XP_005160209.1

EC 3.1.3.66

XP_005160210.1

EC 3.1.3.66

XP_009292926.1

EC 3.1.3.66

XP_021333041.1

EC 3.1.3.66

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007112.7 Reference GRCz11 Primary Assembly

Range

52943111..53227341

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005160151.5 → XP_005160208.1 inositol polyphosphate 4-phosphatase type II isoform X3

UniProtKB/TrEMBL

A0A8M2B708

Related

ENSDARP00000113043.1, ENSDART00000147683.3
XM_009294651.4 → XP_009292926.1 inositol polyphosphate 4-phosphatase type II isoform X1

UniProtKB/TrEMBL

A0A8M3AKS0
XM_021477366.2 → XP_021333041.1 inositol polyphosphate 4-phosphatase type II isoform X2

UniProtKB/TrEMBL

A0A8M9QBK0

Related

ENSDARP00000103422.4, ENSDART00000108492.4
XM_005160153.5 → XP_005160210.1 inositol polyphosphate 4-phosphatase type II isoform X4

See identical proteins and their annotated locations for XP_005160210.1

UniProtKB/TrEMBL

A0A8M2B718
XM_005160152.5 → XP_005160209.1 inositol polyphosphate 4-phosphatase type II isoform X4

See identical proteins and their annotated locations for XP_005160209.1

UniProtKB/TrEMBL

A0A8M2B718

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001145574.1: Suppressed sequence

Description

NM_001145574.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.