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    si:ch211-107o10.3 si:ch211-107o10.3 [ Danio rerio (zebrafish) ]

    Gene ID: 407663, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-107o10.3provided by ZNC
    Official Full Name
    si:ch211-107o10.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4716
    See related
    Ensembl:ENSDARG00000008491 AllianceGenome:ZFIN:ZDB-GENE-030131-4716
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd55e03; wu:fd55e03
    Summary
    Predicted to enable oxidoreductase activity. Predicted to be located in membrane. Orthologous to human RDH13 (retinol dehydrogenase 13). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-107o10.3 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (30178253..30188866)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (29907103..29917716)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene FERM domain containing 5b Neighboring gene transmembrane p24 trafficking protein 3 Neighboring gene microRNA 184-2 Neighboring gene WD repeat domain 76

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Insight into molecular pathways of retinal metabolism, associated with vitellogenesis in zebrafish. Levi L, et al. Am J Physiol Endocrinol Metab, 2012 Mar 15. PMID 22205629
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC407663

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001199300.1 → NP_001186229.1  uncharacterized protein LOC407663

      See identical proteins and their annotated locations for NP_001186229.1

      Status: VALIDATED

      Source sequence(s)
      AW019671, EH483946, EH510392
      UniProtKB/TrEMBL
      A0A8M1NXC6, F1QCW3
      Related
      ENSDARP00000012436.8, ENSDART00000002075.10
      Conserved Domains (2) summary
      PRK06197
      Location:48 → 325
      PRK06197; short chain dehydrogenase; Provisional
      cl21454
      Location:49 → 320
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      30178253..30188866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005168869.5 → XP_005168926.1  uncharacterized protein LOC407663 isoform X1

      See identical proteins and their annotated locations for XP_005168926.1

      UniProtKB/TrEMBL
      A0A8M1NXC6, F1QCW3
      Related
      ENSDARP00000144006.1, ENSDART00000174420.2
      Conserved Domains (2) summary
      PRK06197
      Location:48 → 325
      PRK06197; short chain dehydrogenase; Provisional
      cl21454
      Location:49 → 320
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394696.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      146652..157361
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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