gtf3c3 general transcription factor IIIC, polypeptide 3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: gtf3c3provided by ZNC
Official Full Name: general transcription factor IIIC, polypeptide 3provided by ZNC
Primary source: ZFIN:ZDB-GENE-040914-80
See related: Ensembl:ENSDARG00000043247 AllianceGenome:ZFIN:ZDB-GENE-040914-80
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7136784
Summary: Predicted to be involved in transcription by RNA polymerase III. Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C3 (general transcription factor IIIC subunit 3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (6243906..6272146)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (5546135..5574535)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in transcription by RNA polymerase III	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within transcription by RNA polymerase III	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of transcription factor TFIIIC complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: general transcription factor 3C polypeptide 3

Names: general transcription factor IIIC, polypeptide 3, 102kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001256242.1 → NP_001243171.1 general transcription factor 3C polypeptide 3

Status: PROVISIONAL

Source sequence(s)

CABZ01062046, LO017782, LO018629

UniProtKB/TrEMBL

A0A8M1P2I0, F1RDA7

Related

ENSDARP00000112332.2, ENSDART00000127329.3

Conserved Domains (4) summary

smart00028
Location:844 → 874

TPR; Tetratricopeptide repeats

TIGR02552
Location:445 → 549

LcrH_SycD; type III secretion low calcium response chaperone LcrH/SycD

sd00006
Location:203 → 231

TPR; TPR repeat [structural motif]

pfam13414
Location:238 → 302

TPR_11; TPR repeat