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    dcaf15 DDB1 and CUL4 associated factor 15 [ Danio rerio (zebrafish) ]

    Gene ID: 555243, updated on 9-Dec-2024

    Summary

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    Official Symbol
    dcaf15provided by ZNC
    Official Full Name
    DDB1 and CUL4 associated factor 15provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2374
    See related
    Ensembl:ENSDARG00000077790 AllianceGenome:ZFIN:ZDB-GENE-030131-2374
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc06c01; wu:fc06c01
    Summary
    Predicted to be involved in protein ubiquitination. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DCAF15 (DDB1 and CUL4 associated factor 15). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See dcaf15 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (54069448..54084740)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (53409693..53424981)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene TRIO and F-actin binding protein a Neighboring gene single-pass membrane protein with aspartate-rich tail 1b Neighboring gene regulatory factor X, 1b (influences HLA class II expression) Neighboring gene relaxin 3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in protein ubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DDB1- and CUL4-associated factor 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      54069448..54084740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_677708.10 → XP_682800.2  DDB1- and CUL4-associated factor 15

      UniProtKB/TrEMBL
      A0A8N7TCP2, E7F3Z0
      Related
      ENSDARP00000100925.2, ENSDART00000108601.4
      Conserved Domains (1) summary
      pfam14939
      Location:39 → 247
      DCAF15_WD40; DDB1-and CUL4-substrate receptor 15, WD repeat
    Nucleotide Protein Strain
    Heading Accession and Version

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