spats2 spermatogenesis associated serine rich 2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: spats2provided by ZNC
Official Full Name: spermatogenesis associated serine rich 2provided by ZNC
Primary source: ZFIN:ZDB-GENE-061103-331
See related: Ensembl:ENSDARG00000104316 AllianceGenome:ZFIN:ZDB-GENE-061103-331
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: hcrtr2; zgc:154064
Summary: Orthologous to several human genes including SPATS2 (spermatogenesis associated serine rich 2). [provided by Alliance of Genome Resources, Dec 2024]
Annotation information: Annotation category: partial on reference assembly
Orthologs: all
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Genomic context

Location:: chromosome: 13

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (378509..387540, complement)
RS_2024_08	current	GRCz11 (GCF_000002035.6)	Unplaced Scaffold	NW_003336787.1 (4420..6296)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (378509..387540, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_003336787.1 (4420..6296)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

Z7962 (e-PCR)
- UniSTS:5655

Z6087 (e-PCR)
- UniSTS:41777

z6087 (e-PCR), detects polymorphism
- UniSTS:238204

fb33b12.x1 (e-PCR)
- UniSTS:190403

G46404 (e-PCR)
- UniSTS:107206

fk56e12.x1 (e-PCR)
- UniSTS:201209

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: spermatogenesis-associated serine-rich protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.