ttc27 tetratricopeptide repeat domain 27 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ttc27provided by ZNC
Official Full Name: tetratricopeptide repeat domain 27provided by ZNC
Primary source: ZFIN:ZDB-GENE-030102-1
See related: Ensembl:ENSDARG00000007918 AllianceGenome:ZFIN:ZDB-GENE-030102-1
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: hi1257; chunp6906; flj20272l; im:7158386; wu:fj40h09
Summary: Predicted to be located in membrane. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and pectoral fin bud. Orthologous to human TTC27 (tetratricopeptide repeat domain 27). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 17

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (22760211..22946997)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (22740375..22927161)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fj40h09.x1 (e-PCR)
- UniSTS:188523

fj94g10.x1 (e-PCR)
- UniSTS:200405

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: tetratricopeptide repeat protein 27

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_173285.2 → NP_775392.2 tetratricopeptide repeat protein 27

Status: VALIDATED

Source sequence(s)

BX511309, BX548077, CT027669

UniProtKB/TrEMBL

A0A8M1P826, K7DY99

Related

ENSDARP00000126427.1, ENSDART00000151999.2

Conserved Domains (3) summary

sd00006
Location:560 → 586

TPR; TPR repeat [structural motif]

pfam00515
Location:560 → 591

TPR_1; Tetratricopeptide repeat

pfam13414
Location:560 → 622

TPR_11; TPR repeat