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    tmigd1 transmembrane and immunoglobulin domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 559127, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tmigd1provided by ZNC
    Official Full Name
    transmembrane and immunoglobulin domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080303-6
    See related
    Ensembl:ENSDARG00000007040 AllianceGenome:ZFIN:ZDB-GENE-080303-6
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    sc:d157; sc:d810
    Summary
    Predicted to be active in neuron projection. Orthologous to human TMIGD1 (transmembrane and immunoglobulin domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See tmigd1 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (39925813..39931417, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (39902429..39907862, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene mitochondrial rRNA methyltransferase 3b Neighboring gene PITP-less RdgB-like protein Neighboring gene uncharacterized LOC108180812 Neighboring gene solute carrier family 47 member 1 Neighboring gene solute carrier family 47 member 2, tandem duplicate 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Histological, biochemical and transcriptomic analyses reveal liver damage in zebrafish (Danio rerio) exposed to phenanthrene. Mai Y, et al. Comp Biochem Physiol C Toxicol Pharmacol, 2019 Nov. PMID 31374294
    2. The first characterization of multidrug and toxin extrusion (MATE/SLC47) proteins in zebrafish (Danio rerio). Lončar J, et al. Sci Rep, 2016 Jun 30. PMID 27357367, Free PMC Article
    3. Evolution of the tbx6/16 subfamily genes in vertebrates: insights from zebrafish. Ahn D, et al. Mol Biol Evol, 2012 Dec. PMID 22915831
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane and immunoglobulin domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098248.2 → NP_001091718.2  transmembrane and immunoglobulin domain-containing protein 1 precursor

      Status: VALIDATED

      Source sequence(s)
      CABZ01065292
      Related
      ENSDARP00000151307.1, ENSDART00000180010.1

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      39925813..39931417 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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